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LINGUIST List 19.1601

Tue May 20 2008

Confs: Computational Linguistics, Text/Corpus Linguistics/Morocco

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        1.    Jian Su, Building and Evaluating Resources for Biomedical Text Mining


Message 1: Building and Evaluating Resources for Biomedical Text Mining
Date: 16-May-2008
From: Jian Su <sujiani2r.a-star.edu.sg>
Subject: Building and Evaluating Resources for Biomedical Text Mining
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Building and Evaluating Resources for Biomedical Text Mining
Short Title: BERBMTX-08

Date: 26-May-2008 - 26-May-2008
Location: Marrakech, Morocco
Contact: Sophia Ananiadou
Contact Email: sophia.ananiadoumanchester.ac.uk
Meeting URL: http://www.lrec-conf.org/lrec2008/

Linguistic Field(s): Computational Linguistics; Text/Corpus Linguistics

Meeting Description:

Papers presented will be reporting on biomedical resources specifically used to
facilitate biomedical text mining and the process of designing, building,
updating, delivering, evaluating and disseminating them. A focus of the
workshop is on lexical and knowledge repositories (e.g. controlled
vocabularies, terminologies, ontologies, factual databases) and annotated
corpora. Another focus is on design guidelines, standards for building
resources, storage and exchange format, interoperability of resources and
last, on exploring new directions for their dissemination.

9:30 - 10:30
Invited Talk: Mark Liberman,
University of Pennsylvania & Linguistic Data Consortium

10:30 - 11:00
Coffee Break

11:00 - 12:40
Session 1

11:00
A Comparison of Knowledge Resource Designs: Supporting Term-level Text Annotation
A. Tribble, J. Kim, T. Ohta, J. Tsujii

11:30
The ITI TXM Corpora: Tissue Expressions and Protein-Protein Interactions
B. Alex, C. Grover, B. Haddow, M. Kabadjov, E. Klein, M. Matthews, S. Roebuck,
R. Tobin, X. Wang

12:00
Semantic Annotation of Clinical Text: The CLEF Corpus
A. Roberts, R. Gaizauskas, M. Hepple, G. Demetriou, Y. Guo, A. Setzer, I. Roberts

12:20
Categorising Modality in Biomedical Texts
P. Thompson, G. Venturi, J. McNaught, S. Montemagni, S. Ananiadou

12:40 - 14:20
Lunch Break

14:20 - 16:00
Session 2

14:20
Static Dictionary Features for Term Polysemy Identification
P. Pezik, A. Jimeno, V. Lee, D. Rebholz-Schuhmann

14:50
Pyridines, Pyridine and Pyridine Rings: Disambiguating Chemical Named Entities
P. Corbett, C. Batchelor, A. Copestake

15:20
Chemical Names: Terminological Resources and Corpora Annotation
C. Kolarik, R. Klinger, C. Friedrich, M. Hofmann-Apitius, J. Fluck

15:40
Towards a Human Anatomy Data Set for Query Pattern Mining based on Wikipedia and
Domain Semantic Resources
P. Wennerberg, P. Buitelaar, S. Zillner

16:00 - 16:10
Concluding Remarks

16:10 - 16:30
Coffee
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